Hello! You are all most welcome but I do not deserve the thanks - it's the freemyipod team, Rockbox team, and Cástor Muñoz that deserves the appreciation for their work.
I noticed something strange about certain tracks on the commute to work today, so out of curiosity I looked at the bug tracker: lo and behold, Cástor Muñoz also noticed something was off and found out it's due to high frequencies being progressively attenuated. He's posted a v2 of his L-R channel swap patch just today, which I will apply and build when I get home this evening. Hot off the developer!
I forgot to mention in my first post, my iPod is a Classic 6G 160GB "thick", and in addition to the L-R channel swap patch my previous rockbox.zip included the CPU downvolt/underclock and LCD sleep patches. I will also include hardware click in the new rockbox.zip that I build tonight.
It would be great if more people could test it out and provide feedback, to which I'll forward to Cástor Muñoz and the Rockbox team. It's a shame I don't have an oscilloscope here with me (I should really invest in a pico oscilloscope) so I can't test the frequency response - if anyone else has one or has audiophile ears then please do! Listen to lots of tracks and see if you can hear anything that seems out of place. Hopefully, these patches will make it into the main svn repository and take us one step closer to a more stable iPod Classic Rockbox.