Mainly because LG has the market share to force software makers to accommodate it's products and many more engineers working on their flagship phone vs. an afterthought niche product. It is are not the only phone with better a DAC but LG's is the only one that got everyone on board.
External DACs are a different animal entirely, the output has been standardized. Though this could be implemented internally ( like plugging an car adapter into an outlet and then pluggin a power inverted to that DC current to make it AC again), it probably takes another chip-set ( that would be the usb digital sound interface ) and maybe board board to do it.Internally it could cause jitter and a host ( no pun) of other problems you get from running a usb DAC. I doubt any manufacturer would think to add an internal host to make it broadly compatible. Their goal is to only make it work with their player after all. Though I think in the case of LG, they kind of did something like this, so as not to need every app to be updated. The standardization can be on the phone end or the app end. In the case of Poweramp, it is in the app for us.
It is quite possible a firmware update could do the same thing for us, it would need only contain the api to the dac and instructions to pipe everything though it. But not likely Onkyo/Pioneer would go out on a limb to support 3rd party apps. The money and market share isn't in it for them. The entire DAP market is pretty tiny. Is isn't out of the question that someone could write an Android app to do it, like in the case of the Qualcom DAC. Again, it is a matter of market share and profitability.
And remember LG had to release a fix, even they did not have it correct coming out of the box.
Balanced signals are the AMP not the DAC. Presumably all sounds go though the Amp as it is an analog signal, no other hardware is needed. Both amps are only engaged with the balanced output. Since the opamp in the DPX1 is of better quality, that explains why overall the sound is good, even with the 3rd party apps using software decoding. In the DP-X1 I find the software decoding noisy, possibly interference, and that is why the DAC is in a separate board. Using very good hard to drive headphones though ( HiFiMan HE-6 and Senn HD800). Usually I can perceive differences in DACs mostly with lossless files, except when there is noise. I suspect most people cannot differentiate any DACs. That is why only the cursed few are forced to spend $$$ on good audio gear. Most cannot hear the difference. I I could be happy with a Galaxy and factory earbuds, I would.