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Sounds like a good plan. DACs are very important, but a cleaner signal will help any DAC. Better quality DACs will show these improvements more, so once you upgrade you'll know that you are getting the best signal that you can from your new DAC.
As far as I can tell from the pictures, yes you'd want to use the optical input/output between the two. So, USB into the Mutec, optical out of the Mutec, and finally optical into the Fostex. The USB on the Mutec appears to be bi-directional, so you could also use it as a USB out at some point, but would have to come from either the Coax or Optical out of a motherboard. If it had two USBs, one input and one output, I could have used it with my setup and a lot of others could have as well. Maybe one day...
While there are quite a few folks who do not like optical, I think you'll find that you can really find about the same amount not liking USB nor Coax as well. There are strengths and weakness to all of them, so it's important to understand each. I believe the biggest issues with optical have always been both the connectors and the material. Generally the connectors are very cheaply made and not just on cables, mostly on equipment; while the Mutec connectors are probably high quality, the ones on say your motherboard or even some DACs may be low quality. Some who are fans of optical only use the best (most expensive) optical cables so that jitter creation is non-existent. Small timing/registering delays can occur within optical due to how the light diffracts and travels at different wavelengths, so it can mess a bit with the clock's timing and/or the signal. However this is usually pretty small and just the fact that you are using the clock off the Mutec unit instead of your CPU, negates a large part of potential jitter into the DAC's stream; CPU core clocks are not only clocking your audio, but everything else your computer is processing as well, so compromises have to be made sometimes. One plus to optical is that EMI/RFI doesn't really interfere with it and degrade the signal. Some out there claim that glass is better than plastic and that certain cable lengths should be used. There are some merit to these various opinions, however I've never really been an optical guy, more coax and now USB, so unfortunately I can't help much. If you are planning on upgrading the DAC soon, try to get the best bang for your buck popular optical cable out there for your current DAC, so you have more to put towards the new DAC as well as options for selling it once you do. Unfortunately I do not know what that cable is nor where to find out. You also could wait until you get the new DAC, using the money that would be going to the Mutec for it and then getting the Mutec at a later date afterwards. I'm not sure how many of the Mutec units come up for sale, but finding one used in that time could always be an option.
Hope that helps a little bit more. Contacting Mutec with some of your questions prior to buying wouldn't be a bad idea.
As far as I can tell from the pictures, yes you'd want to use the optical input/output between the two. So, USB into the Mutec, optical out of the Mutec, and finally optical into the Fostex. The USB on the Mutec appears to be bi-directional, so you could also use it as a USB out at some point, but would have to come from either the Coax or Optical out of a motherboard. If it had two USBs, one input and one output, I could have used it with my setup and a lot of others could have as well. Maybe one day...
While there are quite a few folks who do not like optical, I think you'll find that you can really find about the same amount not liking USB nor Coax as well. There are strengths and weakness to all of them, so it's important to understand each. I believe the biggest issues with optical have always been both the connectors and the material. Generally the connectors are very cheaply made and not just on cables, mostly on equipment; while the Mutec connectors are probably high quality, the ones on say your motherboard or even some DACs may be low quality. Some who are fans of optical only use the best (most expensive) optical cables so that jitter creation is non-existent. Small timing/registering delays can occur within optical due to how the light diffracts and travels at different wavelengths, so it can mess a bit with the clock's timing and/or the signal. However this is usually pretty small and just the fact that you are using the clock off the Mutec unit instead of your CPU, negates a large part of potential jitter into the DAC's stream; CPU core clocks are not only clocking your audio, but everything else your computer is processing as well, so compromises have to be made sometimes. One plus to optical is that EMI/RFI doesn't really interfere with it and degrade the signal. Some out there claim that glass is better than plastic and that certain cable lengths should be used. There are some merit to these various opinions, however I've never really been an optical guy, more coax and now USB, so unfortunately I can't help much. If you are planning on upgrading the DAC soon, try to get the best bang for your buck popular optical cable out there for your current DAC, so you have more to put towards the new DAC as well as options for selling it once you do. Unfortunately I do not know what that cable is nor where to find out. You also could wait until you get the new DAC, using the money that would be going to the Mutec for it and then getting the Mutec at a later date afterwards. I'm not sure how many of the Mutec units come up for sale, but finding one used in that time could always be an option.
Hope that helps a little bit more. Contacting Mutec with some of your questions prior to buying wouldn't be a bad idea.