Hi Fyleow,
I think that everyone's got their preferred method and it's up to you to figure out which works best for you. As for my 2 cents, I've tried several different methods; sharpie-on-copper, photographic paper, regular copy paper and transparencies. I have to say that the transparency method has worked best for me and has been a huge time saver compared to other approaches.
I've used HP and 3M transparencies and they all seem to work equally well. Just make sure that you get a fairly heavy weight sheet. A too flimsy sheet may distort or fail during the ironing transfer process. You can do a Google search and find many, many sites that detail different ways to make DIY PCB's or look at an earlier thread on the Gilmore amp in this forum where I've written about my preferred method in a little more detail.
Jeff Noxon has an excellent guide available here
You can also lay the two Gilmore circuit boards side by side on a single 6.25" x 4.5" Radio Shack copper plate and save space and some money too. To do this, just print out two transparencies; iron one on the plate, then register and iron the second one next to it. You can also do this in Photoshop or Paintshop Pro.
I can't agree more with Erix on the importance of sanding and cleaning the surface of the copper plate. Any gunk on the copper plate will actually protect the copper from the Ferric Chloride solution and prevent it from being etched away. Erix' advice on how to actually etch the board in the solution also makes a lot sense. You can try using a heat gun to warm the solution as well (and add salt to the solution if the reaction seems to be slowing down)
Also, while Antness is right on re: the high number of holes, if you use a .038"/ .039 " bit drill bit with a Dremel, you can drill the holes VERY quickly and its actually quite enjoyable drilling through the pcb plate like its a layer of refrigerated chocolate; bzzzzz...bzzzzz. (This was on the full sized pcb pattern, however, not the mini-PCB pattern)
American Science and Surplus sells a mini drill kit at their website here
I got myself a mini drill bit kit for my Dremel that contains about 20 mini-bits, sized from .039" on down to .0135". It cost about $15 US.
Best of luck!