With new versions you'll only gain in slightly smaller files sizes and things like encoding/decoding/packing/unpacking efficiency..... and even then they're going to be very small gains. Not worth worrying about really.
I know I'm resurrecting an old thread, but I felt like someone needed to point this out...you can use flac to reencode FLAC files without re-ripping. Since it's a lossless format, there's no quality loss in simply reencoding files, and the encoder will even carry over the original file's metadata unless you specifically override it.
I'd actually never tried...testing it out on a few random things from my music library, I did find one 24/48 recording that got about ~10% smaller with reencoding, but that was definitely an outlier...for the most part, for both 24-bit and 16-bit recordings, for both commercial downloads and rips I'd encoded myself, it was <1% improvement if there was any improvement at all. I suppose if a recording was inefficiently compressed to begin with (i.e., with a flac setting less than -8), you'd gain something by reencoding it, but it doesn't look like there's enough gains between versions of flac to warrant reencoding on a regular basis or anything. I was just pointing out that, if you did want to see if a newer version of flac compressed better (it probably won't), it'd be more efficient to just reencode the existing FLAC files than to re-rip the CD.
So FLAC is supposed to be a bit-for-bit, 100% copy of a PCM stream. The compressed bitstream format has been fixed since the beta versions; you're just getting more decoding options, more metadata options, and better compression ratios in newer versions - as well as a couple of bug fixes. But the audio is the same, and has been for a very long time. The changelog actually mentions very few differences under flac format, even going back really far.
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