I'm not going to defend the article beyond the general conclusion that the main difference of tubes is the higher output impedance, same thing that Bob Carver said and did to match the sound years ago. The changes in frequency response are an effect of this. Transistor amps make sense on a lot of levels but not with certain drivers or speakers.
Recall that Carver's goal was to get a 70dB null between the reference tube amp and his 1.0 amp, which ultimately resulted in identical amp sounds, though the Stereophile guys wouldn't permit ABX testing. The problem with getting a 70dB null between two different amps is that it's hypersensitive to inaudible differences like minute phase shifts and microscopic changes in amplitude vs frequency. Most of what he did was raise the output Z of his SS amp, but there was obviously a lot more to get that null. The 70dB null may not have been necessary, and the comparison tests were fully sighted and biased.
What does this have to do with tube amp modeling? Well, if you're trying to model a particular tube amp working into a particular speaker load, it's unlikely you'll find a plugin to do that. It makes no sense anyway unless you have the exact speaker to present that load. Moreover, that speaker is just the middle, actually kind of the beginning of a signal chain that includes the room. Modeling, therefore, would have to include the reference amp, reference speaker, reference room and reference LP. Today that is entirely possible, but rather impractical given the massive combinations of speakers amps and rooms available.
That's not what tube modelling tries to do. What it does is model the general characteristics of tube amps, even some specific ones, and they do that well enough.
This article is heavy but very well written. The author designs a full range speaker that uses the higher output impedance of the tube amp.
http://www.diyaudio.com/forums/diyaudio-com-articles/158899-arpeggio-loudspeaker.html
Yes, and he's a favorite author here too.
All i know is that it wouldn't change the physical q of the system. Maybe its good enough for some, this is probably what tube preamps do, but the damping is the same.
I'm not convinced that you couldn't model a highly damped system, and build a model that produced a simulated under damped result, and vice-versa. You would have to characterize both, and use a good SS amp. There would be issues, measurement would be tricky, but as long as you didn't exceed the physical capabilities of the speaker playing the model it could be done. The rough parallel would be phase-compensating a complex filter with an inverse all-pass network. Not quite the same thing, but it can be done in the analog domain, so it can be done better and with more precision in the digital domain.
I'm not sure why anyone would want to, though.