I have used this method to remove some IC's, but it should work with through-hole components too. Find some thick resistor lead or bare solid wire, cut an inch or so and butt it up against the 'front' 3-pin row on the pot so it's touching all three pins. Make sure it's making physical contact with all three pins, even if it means (temporarily) soldering the lead to the pins as if you mean it to be permanent.
Then, melt solder liberally at each of the pins, and melt more solder along the resistor lead, allowing you to "connect" all three pins with one blob of solder. Turn up your iron really hot, heat the long blob of solder with one hand, and with the other hand pull on the pot's shaft so you pull/rotate the pot off the board and out of that row of holes. Then repeat on the back row of 3 pins, and pull the pot completely off the board.
This is kind of the poor man's chip-quik... The only thing is, I was removing damaged components, so I didn't care what happened to them - this method will probably fry anything you use it on, but if you just want to get it off and toss it in the trash, it works fine.