I have the Micro Stack (2006) portable DAC and Amp, and I am burning in the amp right now. It sounds VERY good, but I haven't done a detailed evaluation of the Amp. So I don't want to comment about that section yet vs these.
In the limited time I've had it I do think the DAC's line out is more balanced and warm than the DAC line out from the iBasso D1, despite trying 4 different opamps in the iBasso DAC section. I bought this mainly for a better portable optical DAC, and I use it with the iRiver H140 and Predator, which all fits in a headroom Micro Bag. I could not fit the iRiver AND Micro Amp in the bag at the same time with the Micro DAC, and I can't really fit the D2 in there either (stretches the clear plastic and might rip it).
The 2007 Micro portable is now a 2 in 1, but they changed the DAC chip from the flagship Cirrus Logic to another chip, and several other changes were made which I don't know the effect on performance. I haven't seen reviews yet. It certainly is a bigger package, and I consider it more of a transportable, like the D1. The 20 hour re-chargable battery is a plus, over a FOUR 250 mah 9v re-chargables for the "stack" that need a separate charger.
I only bought the Micro Amp as an afterthought because of the $120 discount for the package deal, and already like it better than my HeadFive or Meier HA-1, which aren't portable. Then again, I've said the Predator is better than those two also.