This thread is quite funny!
Lets assume Patrick used the WAVE file as source when encoding to FLAC. In that case both files contain identical audio data (most probably a PCM stream), and playing them back
should put out identical audio data.
Jitter or noise from spinning hard drives and/or other hardware might be different though. Since FLAC consume more CPU power, while WAVE need more hard drive reading.
In the end, if Patrick find WAVE to sound better then be it. Let him decode all of his FLAC files!
